Discussion group for the ARIA software

[Benjamin Bardiaux <bardiaux AT pasteur.fr>]

Dear Francisco,

I suspect it comes from the "ARIA Compatibility Patches: proposed by 
CCPN 
(https://www.ccpn.ac.uk/v2-software/downloads/aria-compatibility-patches).

Those patches are not needed anymore and sort of obsolete. Please 
reinstall aria2.

Best,

Benjamin

On 12/02/2020 13:43, Francisco Conejero Lara wrote:
> Hi,
> I am trying to run a structure calculation with Aria2.3 using a project
> created with ccpnmr2.4 analysis. The programs stops after the 8
> iterations are finised with the following output:
> MESSAGE [Protocol]: Report for Merging-step written (/home/fcl/nmr/AII/
>                      AII_2019_restrains/run6/structures/it8/noe_restrain
> ts.merged
>                      ).
> Traceback (most recent call last):
>    File "/usr/local/bin/aria2.3/aria2.py", line 903, in <module>
>      verbose_level, use_condor=condor)
>    File "/usr/local/bin/aria2.3/aria2.py", line 813, in run_aria
>      project.go(use_condor)
>    File "/usr/local/bin/aria2.3/src/py/aria/Project.py", line 1666, in
> go
>      self.run_protocol(first_iteration)
>    File "/usr/local/bin/aria2.3/src/py/aria/Project.py", line 1672, in
> run_protocol
>      last_iteration = self.getProtocol().go(iteration,
> self.getMolecule())
>    File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 1841, in
> go
>      iteration = self.start(iteration, molecule)
>    File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 1825, in
> start
>      return self.run_protocol(molecule, iteration)
>    File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 2318, in
> run_protocol
>      self.writeReports(iteration)
>    File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 1703, in
> writeReports
>      self.dumpIteration(iteration)
>    File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 1392, in
> dumpIteration
>      self._dump_ccpn(iteration, path)
>    File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 1068, in
> _dump_ccpn
>      structures = ccpnExport.getStructuresFromAria2Dir(path, chains,
> pdb_list)
> TypeError: getStructuresFromAria2Dir_Format() takes exactly 2 arguments
> (3 given)
> ---
>
> Any help is welcome.
>
> Francisco


--
---------------------------------------------
Dr Benjamin Bardiaux      bardiaux AT pasteur.fr
Unité de Bioinformatique Structurale
CNRS UMR3528 - Institut Pasteur
25,28 rue du Docteur Roux 75015 Paris, France
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