Subject: Discussion group for the ARIA software
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- From: Francisco Conejero Lara <conejero AT ugr.es>
- To: aria-discuss AT services.cnrs.fr
- Subject: [aria-discuss] Aria2.3 stops after 8th iteration
- Date: Wed, 12 Feb 2020 13:43:24 +0100
- Organization: Universidad de Granada
Hi,
I am trying to run a structure calculation with Aria2.3 using a project
created with ccpnmr2.4 analysis. The programs stops after the 8
iterations are finised with the following output:
MESSAGE [Protocol]: Report for Merging-step written (/home/fcl/nmr/AII/
AII_2019_restrains/run6/structures/it8/noe_restrain
ts.merged
).
Traceback (most recent call last):
File "/usr/local/bin/aria2.3/aria2.py", line 903, in <module>
verbose_level, use_condor=condor)
File "/usr/local/bin/aria2.3/aria2.py", line 813, in run_aria
project.go(use_condor)
File "/usr/local/bin/aria2.3/src/py/aria/Project.py", line 1666, in
go
self.run_protocol(first_iteration)
File "/usr/local/bin/aria2.3/src/py/aria/Project.py", line 1672, in
run_protocol
last_iteration = self.getProtocol().go(iteration,
self.getMolecule())
File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 1841, in
go
iteration = self.start(iteration, molecule)
File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 1825, in
start
return self.run_protocol(molecule, iteration)
File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 2318, in
run_protocol
self.writeReports(iteration)
File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 1703, in
writeReports
self.dumpIteration(iteration)
File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 1392, in
dumpIteration
self._dump_ccpn(iteration, path)
File "/usr/local/bin/aria2.3/src/py/aria/Protocol.py", line 1068, in
_dump_ccpn
structures = ccpnExport.getStructuresFromAria2Dir(path, chains,
pdb_list)
TypeError: getStructuresFromAria2Dir_Format() takes exactly 2 arguments
(3 given)
---
Any help is welcome.
Francisco
- [aria-discuss] Aria2.3 stops after 8th iteration, Francisco Conejero Lara, 02/12/2020
- Re: [aria-discuss] Aria2.3 stops after 8th iteration, Benjamin Bardiaux, 02/12/2020
- [aria-discuss] CCPN/Aria2.3.1 Two Zn Centers/Fingers Structure Calculation, Kelly, Mark, 02/27/2020
- Re: [aria-discuss] CCPN/Aria2.3.1 Two Zn Centers/Fingers Structure Calculation, Benjamin Bardiaux, 02/28/2020
- Re: [aria-discuss] CCPN/Aria2.3.1 Two Zn Centers/Fingers Structure Calculation, David Langelaan, 02/28/2020
- Re: [aria-discuss] CCPN/Aria2.3.1 Two Zn Centers/Fingers Structure Calculation, Benjamin Bardiaux, 02/28/2020
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