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Re: [aria-discuss] Error during PSF-file generation


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  • From: Benjamin Bardiaux <bardiaux AT pasteur.fr>
  • To: <aria-discuss AT services.cnrs.fr>, "Higman, Vicky (Dr.)" <vad5 AT leicester.ac.uk>
  • Subject: Re: [aria-discuss] Error during PSF-file generation
  • Date: Thu, 1 Oct 2020 11:46:10 +0200
  • Authentication-results: mx0.pasteur.fr; spf=None smtp.mailfrom=benjamin.bardiaux AT pasteur.fr; spf=None smtp.helo=postmaster AT EXCHANGE02.corp.pasteur.fr
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  • Organization: CNRS


On the GUI issue - on a Mac I have found it helpful to follow these
instructions:
http://aria.pasteur.fr/faq-1/no-tix-on-mac-use-ccpnmr-analysis-as-a-python-tcl-tk-tix-surrogate
But you may find the same works on Linux. It basically enables you to run
Aria with the CCPN python which has all the packages installed that Aria
needs for the GUI. This should work equally well with CcpNmr 2.4 or 2.5.

Thanks Vicky pointing out this tip. I'm afraid this doesn't work anymore with CcpNmr 2.5 since Tix8.4.3 is not shipped with the new precompiled version (as it used to be with v2.4)

Best,

Benjamin


All the best,

Vicky



On 01/10/2020, 10:21, "aria-discuss-request AT services.cnrs.fr on behalf of
julien.cappele AT univ-lorraine.fr" <aria-discuss-request AT services.cnrs.fr on behalf of
julien.cappele AT univ-lorraine.fr> wrote:

Good morning/afternoon everyone,

I am a PhD student and I am currently trying to locally calculate some
NMR
structures with Aria, on a Ubuntu 20.04 LTS plateform.
To be honest, I've been trying for a week now and I finally installed
"correctly" all the softwares (Aria2.3, CNS1.2) and I am using CcpNmr
2.5.0.

I'm doing the tutorial dedicated to structure calculation of CcpNmr.
However, now that the project is finally set up, I get an error when i'm
starting the calculation with Aria.
Using this command: $ aria2 /path/to/my/project/project.xml, I get a
strange
error that I cannot understand.

"IOError: USER ERROR <aria.cns.CNS> File
"/some/path/to/aria2.3.2_05.08.2019/
aria2.3/src/py/aria/cns.py", line 2038 in prepare
An error occurered during creation of the PSF-file:
"/some/path/to/Tutorials/
CcpnCourse3a/run1/cns/begin/CcpnCourse3a.psf" could not be found."

Also, I cannot use the GUI interface with Aria because I get a strange
error
about Tix package being not installed and I didn't find any solution to
it.

Does someone have a solution to this problem ?
Thanks a lot for your time.

JC



--
---------------------------------------------
Dr Benjamin Bardiaux bardiaux AT pasteur.fr
Unité de Bioinformatique Structurale
CNRS UMR3528 - Institut Pasteur
25,28 rue du Docteur Roux 75015 Paris, France
---------------------------------------------



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